:: grepninjalog ::

:: Friday, June 29, 2001 ::

Linux Business Applications -- an interesting list.

:: grepninja 6/29/2001 02:54:48 PM [+] ::

Linux-elitists Email List

:: grepninja 6/29/2001 02:51:11 PM [+] ::

Another XML Starter page: xml.startkabel.nl/

:: grepninja 6/29/2001 01:36:55 PM [+] ::

Google search: computational neurobiology

:: grepninja 6/26/2001 03:02:58 PM [+] ::

Google search: "computational neuroscience"

:: grepninja 6/26/2001 03:00:12 PM [+] ::

XML and Databases - Copyright 1999-2001 by Ronald Bourret

:: grepninja 6/26/2001 02:29:36 PM [+] ::

Kaski, S., Data exploration using self-organizing maps.

:: grepninja 6/25/2001 03:42:46 PM [+] ::

Exploratory Data Analysis on the Engineering Statistics Handbook at NIST.

:: grepninja 6/25/2001 03:40:29 PM [+] ::

Google search: "exploratory data analysis"

:: grepninja 6/25/2001 03:38:44 PM [+] ::

Visualisation for Bioinformatics, An EBI Workshop - 14/15th April 1999

:: grepninja 6/25/2001 03:30:39 PM [+] ::

Google search for "exploratory+data+analysis+bioinformatics"

:: grepninja 6/25/2001 03:27:04 PM [+] ::

Laboratory of Experimental and Computational Biology (LECB)

:: grepninja 6/25/2001 03:17:27 PM [+] ::

MicroArray Explorer -- "The Microarray Explorer (MAExplorer) is a Java-based data-mining facility for cDNA microarray databases. It may be freely downloaded and run as a stand-alone application on your computer, or run as an applet in your Web browser. The exploratory data analysis environment provides tools for the data-mining of quantitative cDNA expression profiles across multiple microarrays."

:: grepninja 6/25/2001 03:16:38 PM [+] ::

An Open Letter to the Internet's Hackers -- Steve Gibson capitulates

:: grepninja 6/25/2001 03:12:20 PM [+] ::

An Atlas of Cyberspace -- WAY cool!

:: grepninja 6/25/2001 03:09:03 PM [+] ::

Here is more on bioinformatics, genomics, and computational biology.

• Google search - bioinformatics links
• BioPerl
• Google search -- bioperl links
• Google search - computational biology
• Google search - genomics links
• Google search - gene sequencing
• Bioinformatics.org - The open lab is "a non-profit, academe-based organization committed to opening access to bioinformatics research projects, providing Open Source software for bioinformatics by hosting its development, and keeping biological information freely available."
• Bioinformatics and Computational Biology - CNS Molecular Biology Resource
• Biocomputing Hypertext Sourcebook
• A Biocomputing Course
• Algorithms for Molecular Biology: Course Archive (Shamir)
• Guide to Sequence Searching - Harvard U
• The Genetic Algorithms Archive
• Protein sequence analysis A practical guide
• Online Courses and Tutorials
• Bioinformatics Tutorial on the Web - BIOL 362 - Spring 2001
• National Center for Genome Resources (NCGR)
• Tutorial: http://www.sou.edu/BIOLOGY/Courses/Bi341/Bioinfortutorial.htm
• Tutorial: IBM Bioinformatics & Pattern Discovery Group
• IBM's Computational Biology Center

:: grepninja 6/24/2001 12:47:57 AM [+] ::

San Diego Computer Society (SDCS)

:: grepninja 6/22/2001 11:07:32 AM [+] ::

An article at Info@Vis has proclaimed the demise of the old NewsMaps technology. The article also talks about a new, similar technology, Vios, which claims to put the Internet in 3D. Grepninja finds these new visualization technologies very promising.

:: grepninja 6/22/2001 10:11:34 AM [+] ::

Map.net is a proof of concept site for the new products of antarcti.ca, started by XML co-inventor Tim Bray.

:: grepninja 6/22/2001 09:33:00 AM [+] ::

Soapbox: Why XML Schema beats DTDs hands-down for data

:: grepninja 6/21/2001 02:35:41 PM [+] ::

Here is A query for C++ Standard Template Library references.

:: grepninja 6/21/2001 12:21:11 PM [+] ::

An interesting account of some Internet security problems.

:: grepninja 6/19/2001 02:35:23 PM [+] ::

The Experiment Network - an interesting site based in San Diego.

:: grepninja 6/18/2001 04:50:14 PM [+] ::

LinuxDevices.com - "... the embedded Linux portal."

:: grepninja 6/18/2001 04:44:40 PM [+] ::

Bell Labs Unveils Open Source Release of Plan 9(TM) Operating System

:: grepninja 6/18/2001 04:40:45 PM [+] ::

National Partnership for Advanced Computational Infrastructure (NPACI) is connected with the San Diego Supercomputing Center.

:: grepninja 6/18/2001 04:36:45 PM [+] ::

OxLUG - diary of major Linux and Open Source events.

:: grepninja 6/18/2001 04:29:13 PM [+] ::

Monty Kamath's Good Start - Smalltalk information.

:: grepninja 6/18/2001 04:07:08 PM [+] ::

Perl and XML

:: grepninja 6/18/2001 03:07:16 PM [+] ::

SalCentral is "A centralised brokerage that can help customers find web services and help web service providers advertise their functionality using specialist searching facilities and quality assurance checking."

:: grepninja 6/18/2001 11:01:56 AM [+] ::

SHARP Developer Program for new Linux-based handheld.

:: grepninja 6/18/2001 10:09:49 AM [+] ::

Sharp's Linux handheld to have Intel inside - Now Agenda will have some competition. Mark my words: "Linux handhelds will be important in the near future."

:: grepninja 6/14/2001 01:24:49 PM [+] ::

Some bioinformatics links (some specific to San Diego):

• CMS Molecular Biology Resource: Bioinformatics and Computational Biology - at UNL of all places!
• CMS Molecular Biology Resource
• European Bioinformatics Institute (EBI)
• A list of bioinformatics courses
• Article at BioOnline
• Tutorials and Lecture Notes on Bioinformatics
• Quest taps on Structural Bioinformatics' door, an article about Structural Bioinformatics in San Diego.
• Bioinformatics @ La Jolla
• Resource for Bioinformatics - evaluated, up-to-date links and glossary at LabVelocity
• Bioplanet
• Diego Kuonen's Links:Top:Statistics:Datamining:Genomics/
• Bioinformatics Open Source Conference 2000 (BOSC)
• Some SD bio links at Yahoo
• The Lycoming College Macromolecular Modeling and Bioinformatics Page
• A List of Bioinformatics Courses
• Bioinformatics Links - this list is at a very odd site but the links are good, anyway.
• Bioinformatics Laboratory at UCSD
• BIOINFORMATICS IN THE 21st CENTURY - a government report on bioinformatics (Clinton era)
• PHYS 245: Bioinformatics and Genomics in Biomedical Research, Online Resources (TUFTS)
• Biocomputing Course Resource List : Course Syllabi
• Bioinformatics: Key to Unraveling Biocomplexity - source SDSC
• Bioinformatics Hot Links

:: grepninja 6/14/2001 10:41:22 AM [+] ::

O'Reilly OnLamp.com - Linux, Apache, MySQL, PHP, Python, Perl.

:: grepninja 6/12/2001 12:38:03 PM [+] ::

TechSetters is an IBM resource "for UNIX trendsetters."

:: grepninja 6/12/2001 12:23:02 PM [+] ::

Schematron - "The Schematron is a language and toolkit for making assertions about patterns found in XML documents. It can be used as a friendly validation language and for automatically generating external annotation (links, RDF, perhaps Topic Maps). Because it uses paths rather than grammars, it can be used to assert many constraints that cannot be expressed by DTDs or XML Schemas." -- quoted from the Resource Directory (RDDL) for Schematron 1.5 page.

:: grepninja 6/12/2001 11:55:16 AM [+] ::

Things are a bit slow here on GrepNinjaLog these days. Due to a 30% staff reduction at his previous company, GrepNinja is currently looking to put his skills to work for the right San Diego area company. The job search does not leave much time for technology research.

:: grepninja 6/12/2001 09:26:25 AM [+] ::

San Diego has some Linux-oriented users groups:

• San Diego LUG
• Kernel-Panic Linux Users Group (KPLUG)
• Linux System Administrators (LxSA)
• San Diego PHP Users (SDPHP)

:: grepninja 6/12/2001 09:21:28 AM [+] ::

Red Carpet does automatic updates for Ximian GNOME on Linux.

:: grepninja 6/01/2001 08:52:10 AM [+] ::